1 PAS_4#1
222-310 aa · 89 aa · 11.1% of protein
Raw token
PAS_4:222:0.000000423:310:100:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS07060
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550215
ClassHKTypeClassicLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550215#COM85_RS07060Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage467 / 801 aa (58.3%)Merged over positioned domains only.
Domain description3 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation5 items
2 PAS_4#2
332-437 aa · 106 aa · 13.2% of protein
Raw token
PAS_4:332:3.64e-17:437:107:1103 PAS_4#3
461-570 aa · 110 aa · 13.7% of protein
Raw token
PAS_4:461:0.0000000000336:570:112:1104 HisKA#4
587-647 aa · 61 aa · 7.6% of protein
Raw token
HisKA:587:0.00000000000956:647:61:645 HATPase_c#5
695-795 aa · 101 aa · 12.6% of protein
Raw token
HATPase_c:695:3.56e-27:795:104:109- Raw architecture: PAS_4:222:0.000000423:310:100:110#PAS_4:332:3.64e-17:437:107:110#PAS_4:461:0.0000000000336:570:112:110#HisKA:587:0.00000000000956:647:61:64#HATPase_c:695:3.56e-27:795:104:109
- Domain description: 3 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550215::NZ_NVKR01000022.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span116145-118550Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_07060RefSeq proteinWP_023521968.1
Context group ID
GCF_002550215::NZ_NVKR01000022.1::G00029Context members
COM85_RS07060
Partner locus tags
COM85_RS07060
Partner old locus tags
COM85_07060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023521968.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3PG35Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3PG35_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS07060Primary locus identifier stored in the genes table.
Old locus tagCOM85_07060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000022.1Sequence record reported by the local genomic context database.
Genomic interval116 145-118 550 nt2 406 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 145-118 550 ntGCF_002550215::NZ_NVKR01000022.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000022.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000022.1All displayed genes belong to this local TCS context.
Neighborhood span116 145-118 550 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 145 nt118 550 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COM85_RS07060GCF_002550215#COM85_RS07060
HKClassicCurrent focus
116 145-118 550 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS13715Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554322
Simplified PFAM architecture for HKOC_0554322
PFAM domain coverage: 545 / 801 aa (68.0%)
1 aa801 aa
5TM-5TMR_LYTPAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[38-136] | PAS_4[230-310] | PAS_4[332-437] | PAS_9[473-569] | HisKA[587-645] | HATPase_c[694-796]
- Domain count: 6
- Matched identifier: HKOC_0554322
- Positioned domains: 5TM-5TMR_LYT 38-136 ; PAS_4 230-310 ; PAS_4 332-437 ; PAS_9 473-569 ; HisKA 587-645 ; HATPase_c 694-796
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS13715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key