1 HAMP#1
162-235 aa · 74 aa · 15.3% of protein
Raw token
HAMP:162:0.0000000000227:235:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS06470
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550215
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550215#COM85_RS06470Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-313 aa · 68 aa · 14.0% of protein
Raw token
HisKA:246:0.0000000000000879:313:68:643 HATPase_c#3
364-470 aa · 107 aa · 22.1% of protein
Raw token
HATPase_c:364:3.49e-29:470:107:109- Raw architecture: HAMP:162:0.0000000000227:235:74:69#HisKA:246:0.0000000000000879:313:68:64#HATPase_c:364:3.49e-29:470:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550215::NZ_NVKR01000021.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80088-82222Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_06470RefSeq proteinWP_043924693.1
Context group ID
GCF_002550215::NZ_NVKR01000021.1::G00027Context members
COM85_RS06465COM85_RS06470
Partner locus tags
COM85_RS06465COM85_RS06470
Partner old locus tags
COM85_06465COM85_06470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043924693.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3SDG2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3SDG2_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS06470Primary locus identifier stored in the genes table.
Old locus tagCOM85_06470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000021.1Sequence record reported by the local genomic context database.
Genomic interval80 768-82 222 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 088-82 222 ntGCF_002550215::NZ_NVKR01000021.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000021.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000021.1All displayed genes belong to this local TCS context.
Neighborhood span80 088-82 222 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 088 nt82 222 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM85_RS06465GCF_002550215#COM85_RS06465
RROmpR
80 088-80 768 nt · Forward (+)
COM85_RS06470GCF_002550215#COM85_RS06470
HKClassicCurrent focus
80 768-82 222 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS19615Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584584
Simplified PFAM architecture for HKOC_1584584
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[247-312] | HATPase_c[364-471]
- Domain count: 3
- Matched identifier: HKOC_1584584
- Positioned domains: HAMP 184-234 ; HisKA 247-312 ; HATPase_c 364-471
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS19615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key