1 Response_reg#1
6-117 aa · 112 aa · 55.4% of protein
Raw token
Response_reg:6:4.61e-22:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS06395
Response regulator NarL family
Bacillus thuringiensis · GCF_002550215
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550215#COM85_RS06395Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 202 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
137-192 aa · 56 aa · 27.7% of protein
Raw token
HTH_LUXR:137:1.46e-16:192:56:58- Raw architecture: Response_reg:6:4.61e-22:117:112:111#HTH_LUXR:137:1.46e-16:192:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550215::NZ_NVKR01000021.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63398-66119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_06395RefSeq proteinWP_023522756.1
Context group ID
GCF_002550215::NZ_NVKR01000021.1::G00026Context members
COM85_RS06395COM85_RS06400
Partner locus tags
COM85_RS06395COM85_RS06400
Partner old locus tags
COM85_06395COM85_06400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023522756.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3PH90Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3PH90_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS06395Primary locus identifier stored in the genes table.
Old locus tagCOM85_06395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000021.1Sequence record reported by the local genomic context database.
Genomic interval63 398-64 006 nt609 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 398-66 119 ntGCF_002550215::NZ_NVKR01000021.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000021.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000021.1All displayed genes belong to this local TCS context.
Neighborhood span63 398-66 119 nt2 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 398 nt66 119 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM85_RS06395GCF_002550215#COM85_RS06395
RRNarLCurrent focus
63 398-64 006 nt · Reverse (-)
COM85_RS06400GCF_002550215#COM85_RS06400
HKClassic
63 978-66 119 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS19690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2115108
Simplified PFAM architecture for RROC_2115108
PFAM domain coverage: 165 / 202 aa (81.7%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[138-191]
- Domain count: 2
- Matched identifier: RROC_2115108
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 138-191 ; GerE 138-191
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS19690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key