1 HisKA#1
124-170 aa · 47 aa · 14.4% of protein
Raw token
HisKA:124:0.00000926:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS05715
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550215
ClassHKTypeClassicLength327 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550215#COM85_RS05715Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length327 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 327 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa327 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-324 aa · 108 aa · 33.0% of protein
Raw token
HATPase_c:217:7.12e-28:324:108:109- Raw architecture: HisKA:124:0.00000926:170:53:64#HATPase_c:217:7.12e-28:324:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550215::NZ_NVKR01000016.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span284015-285702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_05715RefSeq proteinWP_015055137.1
Context group ID
GCF_002550215::NZ_NVKR01000016.1::G00021Context members
COM85_RS05715COM85_RS05720
Partner locus tags
COM85_RS05715COM85_RS05720
Partner old locus tags
COM85_05715COM85_05720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015055137.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4HF44Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4HF44_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS05715Primary locus identifier stored in the genes table.
Old locus tagCOM85_05715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000016.1Sequence record reported by the local genomic context database.
Genomic interval284 015-284 998 nt984 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span284 015-285 702 ntGCF_002550215::NZ_NVKR01000016.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000016.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000016.1All displayed genes belong to this local TCS context.
Neighborhood span284 015-285 702 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
284 015 nt285 702 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM85_RS05715GCF_002550215#COM85_RS05715
HKClassicCurrent focus
284 015-284 998 nt · Reverse (-)
COM85_RS05720GCF_002550215#COM85_RS05720
RROmpR
284 995-285 702 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS11980Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2861288
Simplified PFAM architecture for HKOC_2861288
PFAM domain coverage: 108 / 327 aa (33.0%)
1 aa327 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-324]
- Domain count: 1
- Matched identifier: HKOC_2861288
- Positioned domains: HATPase_c 217-324
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS11980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key