1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:8.06e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS04260
Response regulator OmpR family
Bacillus thuringiensis · GCF_002550215
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550215#COM85_RS04260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 215 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
141-210 aa · 70 aa · 32.6% of protein
Raw token
Trans_reg_C:141:3.66e-28:210:75:77- Raw architecture: Response_reg:3:8.06e-34:112:111:111#Trans_reg_C:141:3.66e-28:210:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550215::NZ_NVKR01000016.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26236-28252Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_04260RefSeq proteinWP_023522217.1
Context group ID
GCF_002550215::NZ_NVKR01000016.1::G00016Context members
COM85_RS04260COM85_RS04265
Partner locus tags
COM85_RS04260COM85_RS04265
Partner old locus tags
COM85_04260COM85_04265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023522217.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3PGH5Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3PGH5_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS04260Primary locus identifier stored in the genes table.
Old locus tagCOM85_04260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000016.1Sequence record reported by the local genomic context database.
Genomic interval26 236-26 883 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 236-28 252 ntGCF_002550215::NZ_NVKR01000016.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000016.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000016.1All displayed genes belong to this local TCS context.
Neighborhood span26 236-28 252 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 236 nt28 252 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM85_RS04260GCF_002550215#COM85_RS04260
RROmpRCurrent focus
26 236-26 883 nt · Forward (+)
COM85_RS04265GCF_002550215#COM85_RS04265
HKClassic
26 876-28 252 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS15695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1908083
Simplified PFAM architecture for RROC_1908083
PFAM domain coverage: 179 / 215 aa (83.3%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[141-210]
- Domain count: 2
- Matched identifier: RROC_1908083
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 141-210 ; Trans_reg_C 141-210
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS15695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key