1 HAMP#1
58-127 aa · 70 aa · 19.3% of protein
Raw token
HAMP:58:0.00000000000117:127:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS03090
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550215
ClassHKTypeClassicLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550215#COM85_RS03090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 362 aa (66.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 17.1% of protein
Raw token
HisKA:138:0.000000000000391:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.8% of protein
Raw token
HATPase_c:251:2.13e-23:358:109:109- Raw architecture: HAMP:58:0.00000000000117:127:70:69#HisKA:138:0.000000000000391:199:62:64#HATPase_c:251:2.13e-23:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550215::NZ_NVKR01000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10194-11946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_03090RefSeq proteinWP_167332614.1
Context group ID
GCF_002550215::NZ_NVKR01000010.1::G00002Context members
COM85_RS03085COM85_RS03090
Partner locus tags
COM85_RS03085COM85_RS03090
Partner old locus tags
COM85_03085COM85_03090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167332614.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS03090Primary locus identifier stored in the genes table.
Old locus tagCOM85_03090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000010.1Sequence record reported by the local genomic context database.
Genomic interval10 858-11 946 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 194-11 946 ntGCF_002550215::NZ_NVKR01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000010.1All displayed genes belong to this local TCS context.
Neighborhood span10 194-11 946 nt1 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 194 nt11 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM85_RS03085GCF_002550215#COM85_RS03085
RROmpR
10 194-10 892 nt · Forward (+)
COM85_RS03090GCF_002550215#COM85_RS03090
HKClassicCurrent focus
10 858-11 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS10615Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2736033
Simplified PFAM architecture for HKOC_2736033
PFAM domain coverage: 224 / 362 aa (61.9%)
1 aa362 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[75-127] | HisKA[138-200] | HATPase_c[252-359]
- Domain count: 3
- Matched identifier: HKOC_2736033
- Positioned domains: HAMP 75-127 ; HisKA 138-200 ; HATPase_c 252-359
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS10615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key