1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:7.23e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS02540
Response regulator OmpR family
Bacillus thuringiensis · GCF_002550215
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550215#COM85_RS02540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:7.45e-29:225:76:77- Raw architecture: Response_reg:5:7.23e-36:114:111:111#Trans_reg_C:153:7.45e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550215::NZ_NVKR01000008.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span64503-67042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_02540RefSeq proteinWP_000041862.1
Context group ID
GCF_002550215::NZ_NVKR01000008.1::G00067Context members
COM85_RS02540COM85_RS02545
Partner locus tags
COM85_RS02540COM85_RS02545
Partner old locus tags
COM85_02540COM85_02545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000041862.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KSD4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KSD4_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS02540Primary locus identifier stored in the genes table.
Old locus tagCOM85_02540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000008.1Sequence record reported by the local genomic context database.
Genomic interval64 503-65 192 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 503-67 042 ntGCF_002550215::NZ_NVKR01000008.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000008.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000008.1All displayed genes belong to this local TCS context.
Neighborhood span64 503-67 042 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 503 nt67 042 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM85_RS02540GCF_002550215#COM85_RS02540
RROmpRCurrent focus
64 503-65 192 nt · Forward (+)
COM85_RS02545GCF_002550215#COM85_RS02545
HKClassic
65 189-67 042 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS23460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246915
Simplified PFAM architecture for RROC_1246915
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1246915
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS23460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key