1 Response_reg#1
5-114 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:5:1.82e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM84_RS26985
Response regulator OmpR family
Bacillus thuringiensis · GCF_002550185
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550185#COM84_RS26985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 238 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 31.9% of protein
Raw token
Trans_reg_C:154:7.97e-35:229:76:77- Raw architecture: Response_reg:5:1.82e-36:114:111:111#Trans_reg_C:154:7.97e-35:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550185::NZ_NVKQ01000058.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7118-9221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM84_27000RefSeq proteinWP_016078289.1
Context group ID
GCF_002550185::NZ_NVKQ01000058.1::G00066Context members
COM84_RS26985COM84_RS26990
Partner locus tags
COM84_RS26985COM84_RS26990
Partner old locus tags
COM84_27000COM84_27005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016078289.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6Y7A4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6Y7A4_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM84_RS26985Primary locus identifier stored in the genes table.
Old locus tagCOM84_27000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKQ01000058.1Sequence record reported by the local genomic context database.
Genomic interval7 118-7 834 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 118-9 221 ntGCF_002550185::NZ_NVKQ01000058.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550185::NZ_NVKQ01000058.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKQ01000058.1All displayed genes belong to this local TCS context.
Neighborhood span7 118-9 221 nt2 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 118 nt9 221 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM84_RS26985GCF_002550185#COM84_RS26985
RROmpRCurrent focus
7 118-7 834 nt · Forward (+)
COM84_RS26990GCF_002550185#COM84_RS26990
HKClassic
7 824-9 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398945#IAW_RS25070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0933896
Simplified PFAM architecture for RROC_0933896
PFAM domain coverage: 186 / 238 aa (78.2%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0933896
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000398945#IAW_RS25070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550185
AssemblyASM255018v1 · Scaffoldhaploid
Genome composition5 879 059 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 63 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key