1 Response_reg#1
5-111 aa · 107 aa · 47.1% of protein
Raw token
Response_reg:5:7.1e-29:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM84_RS04230
Response regulator OmpR family
Bacillus thuringiensis · GCF_002550185
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550185#COM84_RS04230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 227 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:150:1.15e-28:225:76:77- Raw architecture: Response_reg:5:7.1e-29:111:109:111#Trans_reg_C:150:1.15e-28:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550185::NZ_NVKQ01000007.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59082-61228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM84_04230RefSeq proteinWP_098033093.1
Context group ID
GCF_002550185::NZ_NVKQ01000007.1::G00070Context members
COM84_RS04230COM84_RS04235
Partner locus tags
COM84_RS04230COM84_RS04235
Partner old locus tags
COM84_04230COM84_04235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098033093.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM84_RS04230Primary locus identifier stored in the genes table.
Old locus tagCOM84_04230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKQ01000007.1Sequence record reported by the local genomic context database.
Genomic interval59 082-59 765 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 082-61 228 ntGCF_002550185::NZ_NVKQ01000007.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550185::NZ_NVKQ01000007.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKQ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span59 082-61 228 nt2 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 082 nt61 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM84_RS04230GCF_002550185#COM84_RS04230
RROmpRCurrent focus
59 082-59 765 nt · Forward (+)
COM84_RS04235GCF_002550185#COM84_RS04235
HKClassic
59 753-61 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550185#COM84_RS04230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1364242
Simplified PFAM architecture for RROC_1364242
PFAM domain coverage: 181 / 227 aa (79.7%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1364242
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 151-224 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_002550185#COM84_RS04230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550185
AssemblyASM255018v1 · Scaffoldhaploid
Genome composition5 879 059 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 63 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key