1 Response_reg#1
10-119 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:10:1.27e-24:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS13105
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002549945
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549945#CGS56_RS13105Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:6.14e-30:233:77:77- Raw architecture: Response_reg:10:1.27e-24:119:111:111#Trans_reg_C:157:6.14e-30:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549945::NZ_NMTW01000049.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84733-86816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_13085RefSeq proteinWP_097786057.1
Context group ID
GCF_002549945::NZ_NMTW01000049.1::G00009Context members
CGS56_RS13105CGS56_RS13110
Partner locus tags
CGS56_RS13105CGS56_RS13110
Partner old locus tags
CGS56_13085CGS56_13090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097786057.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A6C8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A6C8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS13105Primary locus identifier stored in the genes table.
Old locus tagCGS56_13085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000049.1Sequence record reported by the local genomic context database.
Genomic interval84 733-85 452 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 733-86 816 ntGCF_002549945::NZ_NMTW01000049.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000049.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000049.1All displayed genes belong to this local TCS context.
Neighborhood span84 733-86 816 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 733 nt86 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS56_RS13105GCF_002549945#CGS56_RS13105
RROmpRCurrent focus
84 733-85 452 nt · Forward (+)
CGS56_RS13110GCF_002549945#CGS56_RS13110
HKClassic
85 449-86 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS13105The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0911464
Simplified PFAM architecture for RROC_0911464
PFAM domain coverage: 186 / 239 aa (77.8%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-118] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_0911464
- Positioned domains: Response_reg 10-118 ; Response_reg 10-118 ; Trans_reg_C 157-233 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS13105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key