1 HisKA#1
370-436 aa · 67 aa · 8.9% of protein
Raw token
HisKA:370:3.69e-17:436:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS10880
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_002549945
ClassHKTypeHybridLength756 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS10880Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length756 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 756 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa756 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
482-599 aa · 118 aa · 15.6% of protein
Raw token
HATPase_c:482:3.6e-31:599:118:1093 Response_reg#3
628-744 aa · 117 aa · 15.5% of protein
Raw token
Response_reg:628:4.51e-28:744:117:111- Raw architecture: HisKA:370:3.69e-17:436:67:64#HATPase_c:482:3.6e-31:599:118:109#Response_reg:628:4.51e-28:744:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000044.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span32387-34657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_10860RefSeq proteinWP_097785821.1
Context group ID
GCF_002549945::NZ_NMTW01000044.1::G00005Context members
CGS56_RS10880
Partner locus tags
CGS56_RS10880
Partner old locus tags
CGS56_10860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097785821.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A780Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A780_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS10880Primary locus identifier stored in the genes table.
Old locus tagCGS56_10860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000044.1Sequence record reported by the local genomic context database.
Genomic interval32 387-34 657 nt2 271 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 387-34 657 ntGCF_002549945::NZ_NMTW01000044.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000044.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000044.1All displayed genes belong to this local TCS context.
Neighborhood span32 387-34 657 nt2 271 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 387 nt34 657 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS10880GCF_002549945#CGS56_RS10880
HKHybridCurrent focus
32 387-34 657 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS10880The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0654104
Simplified PFAM architecture for HKOC_0654104
PFAM domain coverage: 298 / 756 aa (39.4%)
1 aa756 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[370-436] | HATPase_c[483-597] | Response_reg[628-743]
- Domain count: 3
- Matched identifier: HKOC_0654104
- Positioned domains: HisKA 370-436 ; HATPase_c 483-597 ; Response_reg 628-743
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS10880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key