1 PAS_3#1
53-141 aa · 89 aa · 12.4% of protein
Raw token
PAS_3:53:0.00000000000314:141:95:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS07145
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_002549945
ClassRRTypeRpfGLength716 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS07145Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFResponse_regHD
Protein length716 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage438 / 716 aa (61.2%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa716 aa
Domain-by-domain annotation4 items
2 GGDEF#2
205-349 aa · 145 aa · 20.3% of protein
Raw token
GGDEF:205:1.17e-37:349:157:1603 Response_reg#3
374-478 aa · 105 aa · 14.7% of protein
Raw token
Response_reg:374:3.74e-27:478:106:1114 HD#4
569-667 aa · 99 aa · 13.8% of protein
Raw token
HD:569:0.00000000000129:667:99:110- Raw architecture: PAS_3:53:0.00000000000314:141:95:89#GGDEF:205:1.17e-37:349:157:160#Response_reg:374:3.74e-27:478:106:111#HD:569:0.00000000000129:667:99:110
- Domain description: 1 PAS_3,1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000030.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46423-48573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_07135RefSeq proteinWP_242965766.1
Context group ID
GCF_002549945::NZ_NMTW01000030.1::G00011Context members
CGS56_RS07145
Partner locus tags
CGS56_RS07145
Partner old locus tags
CGS56_07135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242965766.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS07145Primary locus identifier stored in the genes table.
Old locus tagCGS56_07135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000030.1Sequence record reported by the local genomic context database.
Genomic interval46 423-48 573 nt2 151 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 423-48 573 ntGCF_002549945::NZ_NMTW01000030.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000030.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000030.1All displayed genes belong to this local TCS context.
Neighborhood span46 423-48 573 nt2 151 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 423 nt48 573 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS07145GCF_002549945#CGS56_RS07145
RRRpfGCurrent focus
46 423-48 573 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS07145The current gene is the representative for this cluster.
PFAM architecturePAS_3 + GGDEF + Response_reg + HD_54 domains in the representative PFAM annotation.
PFAM architecture for RROC_0025203
Simplified PFAM architecture for RROC_0025203
PFAM domain coverage: 474 / 716 aa (66.2%)
1 aa716 aa
PAS_3GGDEFResponse_regHD_5
- Simplified architecture: PAS_3 + GGDEF + Response_reg + HD_5
- Raw architecture: PAS_3[54-134] | GGDEF[205-349] | Response_reg[374-480] | HD_5[549-689]
- Domain count: 4
- Matched identifier: RROC_0025203
- Positioned domains: PAS_3 54-134 ; PAS_3 54-134 ; GGDEF 205-349 ; GGDEF 205-349 ; Response_reg 374-480 ; Response_reg 374-480 ; HD_5 549-689 ; HD_5 549-689
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS07145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key