1 Response_reg#1
6-110 aa · 105 aa · 45.3% of protein
Raw token
Response_reg:6:0.00000000000000648:110:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS04770
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_002549945
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS04770Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 232 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-227 aa · 88 aa · 37.9% of protein
Raw token
LytTR:140:1.45e-22:227:93:98- Raw architecture: Response_reg:6:0.00000000000000648:110:109:111#LytTR:140:1.45e-22:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000026.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15673-16371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_04765RefSeq proteinWP_005924492.1
Context group ID
GCF_002549945::NZ_NMTW01000026.1::G00026Context members
CGS56_RS04770
Partner locus tags
CGS56_RS04770
Partner old locus tags
CGS56_04765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005924492.1Primary protein accession used for annex mappings.
UniProt accessionC7H891Primary UniProt accession resolved in the annex database.
UniProt IDC7H891_FAED2Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS04770Primary locus identifier stored in the genes table.
Old locus tagCGS56_04765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000026.1Sequence record reported by the local genomic context database.
Genomic interval15 673-16 371 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 673-16 371 ntGCF_002549945::NZ_NMTW01000026.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000026.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000026.1All displayed genes belong to this local TCS context.
Neighborhood span15 673-16 371 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 673 nt16 371 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS04770GCF_002549945#CGS56_RS04770
RRLytTRCurrent focus
15 673-16 371 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS09040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119695
Simplified PFAM architecture for RROC_1119695
PFAM domain coverage: 198 / 232 aa (85.3%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-114] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1119695
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS09040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key