1 Response_reg#1
3-112 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:3:0.00000000000000128:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS03240
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_002549945
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS03240Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 240 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.3% of protein
Raw token
LytTR:139:0.0000000696:230:97:98- Raw architecture: Response_reg:3:0.00000000000000128:112:112:111#LytTR:139:0.0000000696:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000016.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span217313-218035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_03235RefSeq proteinWP_097784976.1
Context group ID
GCF_002549945::NZ_NMTW01000016.1::G00031Context members
CGS56_RS03240
Partner locus tags
CGS56_RS03240
Partner old locus tags
CGS56_03235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097784976.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7ABZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7ABZ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS03240Primary locus identifier stored in the genes table.
Old locus tagCGS56_03235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000016.1Sequence record reported by the local genomic context database.
Genomic interval217 313-218 035 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span217 313-218 035 ntGCF_002549945::NZ_NMTW01000016.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000016.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000016.1All displayed genes belong to this local TCS context.
Neighborhood span217 313-218 035 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
217 313 nt218 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS03240GCF_002549945#CGS56_RS03240
RRLytTRCurrent focus
217 313-218 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS03240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0886964
Simplified PFAM architecture for RROC_0886964
PFAM domain coverage: 201 / 240 aa (83.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0886964
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS03240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key