1 HisKA#1
121-172 aa · 52 aa · 15.4% of protein
Raw token
HisKA:121:0.00000481:172:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS00135
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549945
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549945#CGS56_RS00135Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 338 aa (46.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-331 aa · 104 aa · 30.8% of protein
Raw token
HATPase_c:228:7.92e-24:331:104:109- Raw architecture: HisKA:121:0.00000481:172:58:64#HATPase_c:228:7.92e-24:331:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549945::NZ_NMTW01000007.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span325-2000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_00135RefSeq proteinWP_097784656.1
Context group ID
GCF_002549945::NZ_NMTW01000007.1::G00028Context members
CGS56_RS00130CGS56_RS00135
Partner locus tags
CGS56_RS00130CGS56_RS00135
Partner old locus tags
CGS56_00130CGS56_00135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097784656.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7ACF8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7ACF8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS00135Primary locus identifier stored in the genes table.
Old locus tagCGS56_00135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000007.1Sequence record reported by the local genomic context database.
Genomic interval984-2 000 nt1 017 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span325-2 000 ntGCF_002549945::NZ_NMTW01000007.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000007.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span325-2 000 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
325 nt2 000 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS56_RS00130GCF_002549945#CGS56_RS00130
RROmpR
325-987 nt · Forward (+)
CGS56_RS00135GCF_002549945#CGS56_RS00135
HKClassicCurrent focus
984-2 000 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS00135The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2842452
Simplified PFAM architecture for HKOC_2842452
PFAM domain coverage: 110 / 338 aa (32.5%)
1 aa338 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2842452
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS00135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key