1 Response_reg#1
4-116 aa · 113 aa · 56.2% of protein
Raw token
Response_reg:4:3.85e-16:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V440_RS00730
Response regulator LytTR family
Clostridioides difficile · GCF_002352515
ClassRRTypeLytTRLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002352515#V440_RS00730Stable P2CS identifier used across views.
GenomeGCF_002352515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 201 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
139-199 aa · 61 aa · 30.3% of protein
Raw token
LytTR:139:1.18e-16:199:61:98- Raw architecture: Response_reg:4:3.85e-16:116:116:111#LytTR:139:1.18e-16:199:61:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002352515::NZ_JCKG01000026.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1190-1792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV440_00130RefSeq proteinWP_096476470.1
Context group ID
GCF_002352515::NZ_JCKG01000026.1::G00001Context members
V440_RS00730
Partner locus tags
V440_RS00730
Partner old locus tags
V440_00130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_096476470.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV440_RS00730Primary locus identifier stored in the genes table.
Old locus tagV440_00130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JCKG01000026.1Sequence record reported by the local genomic context database.
Genomic interval1 190-1 792 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 190-1 792 ntGCF_002352515::NZ_JCKG01000026.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002352515::NZ_JCKG01000026.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JCKG01000026.1All displayed genes belong to this local TCS context.
Neighborhood span1 190-1 792 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 190 nt1 792 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V440_RS00730GCF_002352515#V440_RS00730
RRLytTRCurrent focus
1 190-1 792 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS05325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988884
Simplified PFAM architecture for RROC_0988884
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-227]
- Domain count: 2
- Matched identifier: RROC_0988884
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-227 ; LytTR 140-227
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS05325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002352515
AssemblyK40_RC10.1 · Contighaploid
Genome composition4 387 948 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key