1 HisKA#1
228-296 aa · 69 aa · 15.4% of protein
Raw token
HisKA:228:0.000000000000416:296:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V439_RS08965
Histidine kinase, Classic
Clostridioides difficile · GCF_002352505
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002352505#V439_RS08965Stable P2CS identifier used across views.
GenomeGCF_002352505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 448 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-447 aa · 105 aa · 23.4% of protein
Raw token
HATPase_c:343:1.97e-28:447:106:109- Raw architecture: HisKA:228:0.000000000000416:296:69:64#HATPase_c:343:1.97e-28:447:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002352505::NZ_JCKF01000045.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span159653-160999Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV439_08810RefSeq proteinWP_223844870.1
Context group ID
GCF_002352505::NZ_JCKF01000045.1::G00023Context members
V439_RS08965
Partner locus tags
V439_RS08965
Partner old locus tags
V439_08810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223844870.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV439_RS08965Primary locus identifier stored in the genes table.
Old locus tagV439_08810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JCKF01000045.1Sequence record reported by the local genomic context database.
Genomic interval159 653-160 999 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span159 653-160 999 ntGCF_002352505::NZ_JCKF01000045.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002352505::NZ_JCKF01000045.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JCKF01000045.1All displayed genes belong to this local TCS context.
Neighborhood span159 653-160 999 nt1 347 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 653 nt160 999 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V439_RS08965GCF_002352505#V439_RS08965
HKClassicCurrent focus
159 653-160 999 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1772968
Simplified PFAM architecture for HKOC_1772968
PFAM domain coverage: 167 / 465 aa (35.9%)
1 aa465 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-306] | HATPase_c[360-464]
- Domain count: 2
- Matched identifier: HKOC_1772968
- Positioned domains: HisKA 245-306 ; HATPase_c 360-464
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002352505
AssemblyK40_RF17.1 · Contighaploid
Genome composition3 938 559 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key