1 Response_reg#1
6-115 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:6:3.21e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V439_RS07110
Response regulator OmpR family
Clostridioides difficile · GCF_002352505
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002352505#V439_RS07110Stable P2CS identifier used across views.
GenomeGCF_002352505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 240 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-235 aa · 76 aa · 31.7% of protein
Raw token
Trans_reg_C:160:2.18e-30:235:77:77- Raw architecture: Response_reg:6:3.21e-33:115:111:111#Trans_reg_C:160:2.18e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002352505::NZ_JCKF01000043.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19469-22493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV439_06975RefSeq proteinWP_009905981.1
Context group ID
GCF_002352505::NZ_JCKF01000043.1::G00016Context members
V439_RS07105V439_RS07110
Partner locus tags
V439_RS07105V439_RS07110
Partner old locus tags
V439_06970V439_06975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905981.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GZ40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GZ40_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV439_RS07110Primary locus identifier stored in the genes table.
Old locus tagV439_06975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JCKF01000043.1Sequence record reported by the local genomic context database.
Genomic interval21 771-22 493 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 469-22 493 ntGCF_002352505::NZ_JCKF01000043.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002352505::NZ_JCKF01000043.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JCKF01000043.1All displayed genes belong to this local TCS context.
Neighborhood span19 469-22 493 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 469 nt22 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V439_RS07105GCF_002352505#V439_RS07105
HKClassic
19 469-21 805 nt · Reverse (-)
V439_RS07110GCF_002352505#V439_RS07110
RROmpRCurrent focus
21 771-22 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0212655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882192
Simplified PFAM architecture for RROC_0882192
PFAM domain coverage: 184 / 240 aa (76.7%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[160-234]
- Domain count: 2
- Matched identifier: RROC_0882192
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 160-234 ; Trans_reg_C 160-234
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0212655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002352505
AssemblyK40_RF17.1 · Contighaploid
Genome composition3 938 559 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key