1 Response_reg#1
5-112 aa · 108 aa · 48.0% of protein
Raw token
Response_reg:5:6.28e-26:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NCKUH21_RS16265
Response regulator OmpR family
Clostridioides difficile · GCF_002335485
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002335485#NCKUH21_RS16265Stable P2CS identifier used across views.
GenomeGCF_002335485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:147:1.15e-29:223:77:77- Raw architecture: Response_reg:5:6.28e-26:112:109:111#Trans_reg_C:147:1.15e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002335485::NZ_BDSN01000026.1::G00053
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span227982-233707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNCKUH21_03256RefSeq proteinWP_009891739.1
Context group ID
GCF_002335485::NZ_BDSN01000026.1::G00053Context members
NCKUH21_RS16245NCKUH21_RS16250NCKUH21_RS16255NCKUH21_RS16260NCKUH21_RS16265
Partner locus tags
NCKUH21_RS16245NCKUH21_RS16250NCKUH21_RS16255NCKUH21_RS16260NCKUH21_RS16265
Partner old locus tags
NCKUH21_03252NCKUH21_03253NCKUH21_03254NCKUH21_03255NCKUH21_03256
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891739.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6D2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6D2_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNCKUH21_RS16265Primary locus identifier stored in the genes table.
Old locus tagNCKUH21_03256Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BDSN01000026.1Sequence record reported by the local genomic context database.
Genomic interval233 030-233 707 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span227 982-233 707 ntGCF_002335485::NZ_BDSN01000026.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002335485::NZ_BDSN01000026.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BDSN01000026.1All displayed genes belong to this local TCS context.
Neighborhood span227 982-233 707 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 982 nt233 707 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
NCKUH21_RS16245GCF_002335485#NCKUH21_RS16245
HKClassic
227 982-229 097 nt · Reverse (-)
NCKUH21_RS16250GCF_002335485#NCKUH21_RS16250
RROmpR
229 133-229 831 nt · Reverse (-)
NCKUH21_RS16255GCF_002335485#NCKUH21_RS16255
RROmpR
230 213-230 893 nt · Reverse (-)
NCKUH21_RS16260GCF_002335485#NCKUH21_RS16260
HKClassic
230 943-232 958 nt · Reverse (-)
NCKUH21_RS16265GCF_002335485#NCKUH21_RS16265
RROmpRCurrent focus
233 030-233 707 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462539
Simplified PFAM architecture for RROC_1462539
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-223]
- Domain count: 2
- Matched identifier: RROC_1462539
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-223 ; Trans_reg_C 147-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216535
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 393 total members. Page 1 / 8.
GCF_000003215#QAC_RS0216535 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002335485
AssemblyASM233548v1 · Contighaploid
Genome composition4 217 149 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key