1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.97e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NCKUH21_RS07325
Response regulator OmpR family
Clostridioides difficile · GCF_002335485
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002335485#NCKUH21_RS07325Stable P2CS identifier used across views.
GenomeGCF_002335485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:4.28e-27:221:75:77- Raw architecture: Response_reg:4:1.97e-25:113:111:111#Trans_reg_C:148:4.28e-27:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002335485::NZ_BDSN01000017.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47837-49539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNCKUH21_01449RefSeq proteinWP_003436727.1
Context group ID
GCF_002335485::NZ_BDSN01000017.1::G00024Context members
NCKUH21_RS07320NCKUH21_RS07325
Partner locus tags
NCKUH21_RS07320NCKUH21_RS07325
Partner old locus tags
NCKUH21_01448NCKUH21_01449
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003436727.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N1Y6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N1Y6_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNCKUH21_RS07325Primary locus identifier stored in the genes table.
Old locus tagNCKUH21_01449Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BDSN01000017.1Sequence record reported by the local genomic context database.
Genomic interval48 865-49 539 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 837-49 539 ntGCF_002335485::NZ_BDSN01000017.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002335485::NZ_BDSN01000017.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BDSN01000017.1All displayed genes belong to this local TCS context.
Neighborhood span47 837-49 539 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 837 nt49 539 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NCKUH21_RS07320GCF_002335485#NCKUH21_RS07320
HKClassic
47 837-48 841 nt · Reverse (-)
NCKUH21_RS07325GCF_002335485#NCKUH21_RS07325
RROmpRCurrent focus
48 865-49 539 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0207550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528471
Simplified PFAM architecture for RROC_1528471
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1528471
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0207550
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 2 227 total members. Page 1 / 45.
GCF_000003215#QAC_RS0207550 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002335485
AssemblyASM233548v1 · Contighaploid
Genome composition4 217 149 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key