1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:2.34e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NCKUH21_RS06965
Response regulator OmpR family
Clostridioides difficile · GCF_002335485
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002335485#NCKUH21_RS06965Stable P2CS identifier used across views.
GenomeGCF_002335485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.38e-30:232:78:77- Raw architecture: Response_reg:12:2.34e-29:120:110:111#Trans_reg_C:155:2.38e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002335485::NZ_BDSN01000016.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span359775-361731Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNCKUH21_01380RefSeq proteinWP_009889278.1
Context group ID
GCF_002335485::NZ_BDSN01000016.1::G00022Context members
NCKUH21_RS06965NCKUH21_RS06970
Partner locus tags
NCKUH21_RS06965NCKUH21_RS06970
Partner old locus tags
NCKUH21_01380NCKUH21_01381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889278.1Primary protein accession used for annex mappings.
UniProt accessionA0A9R0BJT3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9R0BJT3_CLODRDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNCKUH21_RS06965Primary locus identifier stored in the genes table.
Old locus tagNCKUH21_01380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BDSN01000016.1Sequence record reported by the local genomic context database.
Genomic interval359 775-360 500 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span359 775-361 731 ntGCF_002335485::NZ_BDSN01000016.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002335485::NZ_BDSN01000016.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BDSN01000016.1All displayed genes belong to this local TCS context.
Neighborhood span359 775-361 731 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
359 775 nt361 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NCKUH21_RS06965GCF_002335485#NCKUH21_RS06965
RROmpRCurrent focus
359 775-360 500 nt · Forward (+)
NCKUH21_RS06970GCF_002335485#NCKUH21_RS06970
HKClassic
360 478-361 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000027105#CDR20291_RS07180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862707
Simplified PFAM architecture for RROC_0862707
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862707
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000027105#CDR20291_RS07180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002335485
AssemblyASM233548v1 · Contighaploid
Genome composition4 217 149 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key