1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:8.28e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU73_RS03130
Response regulator OmpR family
Clostridioides difficile · GCF_002303675
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303675#BGU73_RS03130Stable P2CS identifier used across views.
GenomeGCF_002303675Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:1.16e-25:222:75:77- Raw architecture: Response_reg:4:8.28e-24:113:111:111#Trans_reg_C:149:1.16e-25:222:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303675::NZ_MOTM01000002.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span159859-160539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU73_03105RefSeq proteinWP_009903427.1
Context group ID
GCF_002303675::NZ_MOTM01000002.1::G00006Context members
BGU73_RS03130
Partner locus tags
BGU73_RS03130
Partner old locus tags
BGU73_03105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009903427.1Primary protein accession used for annex mappings.
UniProt accessionQ184P2Primary UniProt accession resolved in the annex database.
UniProt IDQ184P2_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU73_RS03130Primary locus identifier stored in the genes table.
Old locus tagBGU73_03105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTM01000002.1Sequence record reported by the local genomic context database.
Genomic interval159 859-160 539 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span159 859-160 539 ntGCF_002303675::NZ_MOTM01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303675::NZ_MOTM01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span159 859-160 539 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 859 nt160 539 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU73_RS03130GCF_002303675#BGU73_RS03130
RROmpRCurrent focus
159 859-160 539 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006381005#DA428_RS21075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0534222
Simplified PFAM architecture for RROC_0534222
PFAM domain coverage: 183 / 319 aa (57.4%)
1 aa319 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[97-205] | Trans_reg_C[243-316]
- Domain count: 2
- Matched identifier: RROC_0534222
- Positioned domains: Response_reg 97-205 ; Response_reg 97-205 ; Trans_reg_C 243-316 ; Trans_reg_C 243-316
Cluster members and taxonomy
Representative gene: GCF_006381005#DA428_RS21075
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 1 302 total members. Page 1 / 27.
GCF_006381005#DA428_RS21075 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303675
AssemblyASM230367v1 · Contighaploid
Genome composition4 195 997 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 45 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key