1 HisKA#1
104-172 aa · 69 aa · 21.2% of protein
Raw token
HisKA:104:0.000000000000155:172:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU68_RS19755
Histidine kinase, Classic
Clostridioides difficile · GCF_002303575
ClassHKTypeClassicLength326 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303575#BGU68_RS19755Stable P2CS identifier used across views.
GenomeGCF_002303575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length326 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 326 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
219-325 aa · 107 aa · 32.8% of protein
Raw token
HATPase_c:219:1.69e-27:325:108:109- Raw architecture: HisKA:104:0.000000000000155:172:69:64#HATPase_c:219:1.69e-27:325:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303575::NZ_MOTJ01000174.1::G00060
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU68_19485RefSeq proteinWP_143478967.1
Context group ID
GCF_002303575::NZ_MOTJ01000174.1::G00060Context members
BGU68_RS19755
Partner locus tags
BGU68_RS19755
Partner old locus tags
BGU68_19485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143478967.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU68_RS19755Primary locus identifier stored in the genes table.
Old locus tagBGU68_19485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTJ01000174.1Sequence record reported by the local genomic context database.
Genomic interval1-983 nt983 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-983 ntGCF_002303575::NZ_MOTJ01000174.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303575::NZ_MOTJ01000174.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTJ01000174.1All displayed genes belong to this local TCS context.
Neighborhood span1-983 nt983 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt983 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU68_RS19755GCF_002303575#BGU68_RS19755
HKClassicCurrent focus
1-983 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS10560Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747621
Simplified PFAM architecture for HKOC_1747621
PFAM domain coverage: 167 / 467 aa (35.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-306] | HATPase_c[362-466]
- Domain count: 2
- Matched identifier: HKOC_1747621
- Positioned domains: HisKA 245-306 ; HATPase_c 362-466
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS10560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303575
AssemblyASM230357v1 · Contighaploid
Genome composition4 339 103 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 53 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key