1 HisKA_3#1
57-122 aa · 66 aa · 25.8% of protein
Raw token
HisKA_3:57:5.69e-20:122:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU68_RS07625
Histidine kinase, Classic
Clostridioides difficile · GCF_002303575
ClassHKTypeClassicLength256 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303575#BGU68_RS07625Stable P2CS identifier used across views.
GenomeGCF_002303575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 256 aa (59.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
163-247 aa · 85 aa · 33.2% of protein
Raw token
HATPase_c:163:0.0000000000982:247:104:109- Raw architecture: HisKA_3:57:5.69e-20:122:67:68#HATPase_c:163:0.0000000000982:247:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303575::NZ_MOTJ01000021.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43083-44493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU68_07550RefSeq proteinWP_021359100.1
Context group ID
GCF_002303575::NZ_MOTJ01000021.1::G00019Context members
BGU68_RS07620BGU68_RS07625
Partner locus tags
BGU68_RS07620BGU68_RS07625
Partner old locus tags
BGU68_07545BGU68_07550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021359100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU68_RS07625Primary locus identifier stored in the genes table.
Old locus tagBGU68_07550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTJ01000021.1Sequence record reported by the local genomic context database.
Genomic interval43 723-44 493 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 083-44 493 ntGCF_002303575::NZ_MOTJ01000021.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303575::NZ_MOTJ01000021.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTJ01000021.1All displayed genes belong to this local TCS context.
Neighborhood span43 083-44 493 nt1 411 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 083 nt44 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU68_RS07620GCF_002303575#BGU68_RS07620
RRNarL
43 083-43 730 nt · Reverse (-)
BGU68_RS07625GCF_002303575#BGU68_RS07625
HKClassicCurrent focus
43 723-44 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303575#BGU68_RS07625The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2916594
Simplified PFAM architecture for HKOC_2916594
PFAM domain coverage: 150 / 256 aa (58.6%)
1 aa256 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[57-121] | HATPase_c[163-247]
- Domain count: 2
- Matched identifier: HKOC_2916594
- Positioned domains: HisKA_3 57-121 ; HATPase_c 163-247
Cluster members and taxonomy
Representative gene: GCF_002303575#BGU68_RS07625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303575
AssemblyASM230357v1 · Contighaploid
Genome composition4 339 103 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 53 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key