1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:1.93e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU68_RS06890
Response regulator OmpR family
Clostridioides difficile · GCF_002303575
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303575#BGU68_RS06890Stable P2CS identifier used across views.
GenomeGCF_002303575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-230 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:160:8.14e-26:230:74:77- Raw architecture: Response_reg:5:1.93e-28:114:111:111#Trans_reg_C:160:8.14e-26:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303575::NZ_MOTJ01000018.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18130-20323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU68_06825RefSeq proteinWP_095906067.1
Context group ID
GCF_002303575::NZ_MOTJ01000018.1::G00017Context members
BGU68_RS06890BGU68_RS06895
Partner locus tags
BGU68_RS06890BGU68_RS06895
Partner old locus tags
BGU68_06825BGU68_06830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095906067.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU68_RS06890Primary locus identifier stored in the genes table.
Old locus tagBGU68_06825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTJ01000018.1Sequence record reported by the local genomic context database.
Genomic interval18 130-18 834 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 130-20 323 ntGCF_002303575::NZ_MOTJ01000018.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303575::NZ_MOTJ01000018.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTJ01000018.1All displayed genes belong to this local TCS context.
Neighborhood span18 130-20 323 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 130 nt20 323 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU68_RS06890GCF_002303575#BGU68_RS06890
RROmpRCurrent focus
18 130-18 834 nt · Forward (+)
BGU68_RS06895GCF_002303575#BGU68_RS06895
HKClassic
18 836-20 323 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303575#BGU68_RS06890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053647
Simplified PFAM architecture for RROC_1053647
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[159-230]
- Domain count: 2
- Matched identifier: RROC_1053647
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 159-230 ; Trans_reg_C 159-230
Cluster members and taxonomy
Representative gene: GCF_002303575#BGU68_RS06890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303575
AssemblyASM230357v1 · Contighaploid
Genome composition4 339 103 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 53 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key