1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000406:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU64_RS17660
Histidine kinase, Classic
Clostridioides difficile · GCF_002303485
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303485#BGU64_RS17660Stable P2CS identifier used across views.
GenomeGCF_002303485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 467 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.6% of protein
Raw token
HisKA:245:0.0000000000000143:312:68:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:5.7e-26:465:108:109- Raw architecture: HAMP:166:0.00000406:232:69:69#HisKA:245:0.0000000000000143:312:68:64#HATPase_c:359:5.7e-26:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303485::NZ_MOTF01000091.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5163-7295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU64_17485RefSeq proteinWP_003430133.1
Context group ID
GCF_002303485::NZ_MOTF01000091.1::G00052Context members
BGU64_RS17660BGU64_RS17665
Partner locus tags
BGU64_RS17660BGU64_RS17665
Partner old locus tags
BGU64_17485BGU64_17490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003430133.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU64_RS17660Primary locus identifier stored in the genes table.
Old locus tagBGU64_17485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTF01000091.1Sequence record reported by the local genomic context database.
Genomic interval5 163-6 566 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 163-7 295 ntGCF_002303485::NZ_MOTF01000091.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303485::NZ_MOTF01000091.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTF01000091.1All displayed genes belong to this local TCS context.
Neighborhood span5 163-7 295 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 163 nt7 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU64_RS17660GCF_002303485#BGU64_RS17660
HKClassicCurrent focus
5 163-6 566 nt · Reverse (-)
BGU64_RS17665GCF_002303485#BGU64_RS17665
RROmpR
6 570-7 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS08770Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747878
Simplified PFAM architecture for HKOC_1747878
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747878
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS08770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303485
AssemblyASM230348v1 · Contighaploid
Genome composition4 174 257 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key