1 Response_reg#1
5-114 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:5:3.79e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU64_RS10900
Response regulator OmpR family
Clostridioides difficile · GCF_002303485
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303485#BGU64_RS10900Stable P2CS identifier used across views.
GenomeGCF_002303485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 222 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.4% of protein
Raw token
Trans_reg_C:147:1.13e-29:218:77:77- Raw architecture: Response_reg:5:3.79e-34:114:111:111#Trans_reg_C:147:1.13e-29:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303485::NZ_MOTF01000031.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19103-21032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU64_10795RefSeq proteinWP_096000732.1
Context group ID
GCF_002303485::NZ_MOTF01000031.1::G00025Context members
BGU64_RS10900BGU64_RS10905
Partner locus tags
BGU64_RS10900BGU64_RS10905
Partner old locus tags
BGU64_10795BGU64_10800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_096000732.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU64_RS10900Primary locus identifier stored in the genes table.
Old locus tagBGU64_10795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTF01000031.1Sequence record reported by the local genomic context database.
Genomic interval19 103-19 771 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 103-21 032 ntGCF_002303485::NZ_MOTF01000031.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303485::NZ_MOTF01000031.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTF01000031.1All displayed genes belong to this local TCS context.
Neighborhood span19 103-21 032 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 103 nt21 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU64_RS10900GCF_002303485#BGU64_RS10900
RROmpRCurrent focus
19 103-19 771 nt · Forward (+)
BGU64_RS10905GCF_002303485#BGU64_RS10905
HKClassic
19 755-21 032 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303485#BGU64_RS10900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1644679
Simplified PFAM architecture for RROC_1644679
PFAM domain coverage: 182 / 222 aa (82.0%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-218]
- Domain count: 2
- Matched identifier: RROC_1644679
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-218 ; Trans_reg_C 147-218
Cluster members and taxonomy
Representative gene: GCF_002303485#BGU64_RS10900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303485
AssemblyASM230348v1 · Contighaploid
Genome composition4 174 257 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key