1 Response_reg#1
6-115 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:6:3.21e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU53_RS04805
Response regulator OmpR family
Clostridioides difficile · GCF_002303305
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303305#BGU53_RS04805Stable P2CS identifier used across views.
GenomeGCF_002303305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 240 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-235 aa · 76 aa · 31.7% of protein
Raw token
Trans_reg_C:160:2.18e-30:235:77:77- Raw architecture: Response_reg:6:3.21e-33:115:111:111#Trans_reg_C:160:2.18e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303305::NZ_MPJO01000006.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span128258-131282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU53_04705RefSeq proteinWP_009905981.1
Context group ID
GCF_002303305::NZ_MPJO01000006.1::G00019Context members
BGU53_RS04805BGU53_RS04810
Partner locus tags
BGU53_RS04805BGU53_RS04810
Partner old locus tags
BGU53_04705BGU53_04710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905981.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GZ40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GZ40_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU53_RS04805Primary locus identifier stored in the genes table.
Old locus tagBGU53_04705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPJO01000006.1Sequence record reported by the local genomic context database.
Genomic interval128 258-128 980 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 258-131 282 ntGCF_002303305::NZ_MPJO01000006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303305::NZ_MPJO01000006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPJO01000006.1All displayed genes belong to this local TCS context.
Neighborhood span128 258-131 282 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 258 nt131 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU53_RS04805GCF_002303305#BGU53_RS04805
RROmpRCurrent focus
128 258-128 980 nt · Forward (+)
BGU53_RS04810GCF_002303305#BGU53_RS04810
HKClassic
128 946-131 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0212655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882192
Simplified PFAM architecture for RROC_0882192
PFAM domain coverage: 184 / 240 aa (76.7%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[160-234]
- Domain count: 2
- Matched identifier: RROC_0882192
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 160-234 ; Trans_reg_C 160-234
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0212655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303305
AssemblyASM230330v1 · Contighaploid
Genome composition3 958 605 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key