1 HAMP#1
82-151 aa · 70 aa · 18.3% of protein
Raw token
HAMP:82:0.000000000000011:151:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU52_RS09995
Histidine kinase, Classic
Clostridioides difficile · GCF_002303225
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303225#BGU52_RS09995Stable P2CS identifier used across views.
GenomeGCF_002303225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 382 aa (63.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-222 aa · 65 aa · 17.0% of protein
Raw token
HisKA:158:1.57e-16:222:65:643 HATPase_c#3
270-375 aa · 106 aa · 27.7% of protein
Raw token
HATPase_c:270:7.63e-28:375:107:109- Raw architecture: HAMP:82:0.000000000000011:151:70:69#HisKA:158:1.57e-16:222:65:64#HATPase_c:270:7.63e-28:375:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303225::NZ_MPJN01000193.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5121-6271Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU52_09815RefSeq proteinWP_095889830.1
Context group ID
GCF_002303225::NZ_MPJN01000193.1::G00027Context members
BGU52_RS09995
Partner locus tags
BGU52_RS09995
Partner old locus tags
BGU52_09815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095889830.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU52_RS09995Primary locus identifier stored in the genes table.
Old locus tagBGU52_09815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPJN01000193.1Sequence record reported by the local genomic context database.
Genomic interval5 121-6 271 nt1 151 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 121-6 271 ntGCF_002303225::NZ_MPJN01000193.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303225::NZ_MPJN01000193.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPJN01000193.1All displayed genes belong to this local TCS context.
Neighborhood span5 121-6 271 nt1 151 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 121 nt6 271 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU52_RS09995GCF_002303225#BGU52_RS09995
HKClassicCurrent focus
5 121-6 271 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209215Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1645510
Simplified PFAM architecture for HKOC_1645510
PFAM domain coverage: 220 / 477 aa (46.1%)
1 aa477 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-246] | HisKA[253-316] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1645510
- Positioned domains: HAMP 197-246 ; HisKA 253-316 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303225
AssemblyASM230322v1 · Contighaploid
Genome composition4 020 058 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 43 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key