1 PAS_8#1
175-212 aa · 38 aa · 6.8% of protein
Raw token
PAS_8:175:0.0000369:212:38:65P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV23_RS19205
Histidine kinase, Classic
Clostridioides difficile · GCF_002303155
ClassHKTypeClassicLength555 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303155#BGV23_RS19205Stable P2CS identifier used across views.
GenomeGCF_002303155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_8HisKAHATPase_c
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 555 aa (40.0%)Merged over positioned domains only.
Domain description1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation3 items
2 HisKA#2
298-369 aa · 72 aa · 13.0% of protein
Raw token
HisKA:298:0.00000000169:369:72:643 HATPase_c#3
417-528 aa · 112 aa · 20.2% of protein
Raw token
HATPase_c:417:4.33e-25:528:112:109- Raw architecture: PAS_8:175:0.0000369:212:38:65#HisKA:298:0.00000000169:369:72:64#HATPase_c:417:4.33e-25:528:112:109
- Domain description: 1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303155::NZ_MPFV01000340.1::G00056
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV23_18990RefSeq proteinWP_143478898.1
Context group ID
GCF_002303155::NZ_MPFV01000340.1::G00056Context members
BGV23_RS19205
Partner locus tags
BGV23_RS19205
Partner old locus tags
BGV23_18990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143478898.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV23_RS19205Primary locus identifier stored in the genes table.
Old locus tagBGV23_18990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFV01000340.1Sequence record reported by the local genomic context database.
Genomic interval1-1 669 nt1 669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 669 ntGCF_002303155::NZ_MPFV01000340.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303155::NZ_MPFV01000340.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFV01000340.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 669 nt1 669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 669 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV23_RS19205GCF_002303155#BGV23_RS19205
HKClassicCurrent focus
1-1 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303155#BGV23_RS19205The current gene is the representative for this cluster.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1278170
Simplified PFAM architecture for HKOC_1278170
PFAM domain coverage: 221 / 555 aa (39.8%)
1 aa555 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[175-215] | HisKA[299-367] | HATPase_c[417-527]
- Domain count: 3
- Matched identifier: HKOC_1278170
- Positioned domains: PAS_8 175-215 ; HisKA 299-367 ; HATPase_c 417-527
Cluster members and taxonomy
Representative gene: GCF_002303155#BGV23_RS19205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303155
AssemblyASM230315v1 · Contighaploid
Genome composition4 277 346 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key