1 HisKA_3#1
175-240 aa · 66 aa · 17.6% of protein
Raw token
HisKA_3:175:1.93e-20:240:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV23_RS13415
Histidine kinase, Classic
Clostridioides difficile · GCF_002303155
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303155#BGV23_RS13415Stable P2CS identifier used across views.
GenomeGCF_002303155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 374 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-365 aa · 85 aa · 22.7% of protein
Raw token
HATPase_c:281:0.000000000588:365:104:109- Raw architecture: HisKA_3:175:1.93e-20:240:67:68#HATPase_c:281:0.000000000588:365:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303155::NZ_MPFV01000130.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8685-10449Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV23_13305RefSeq proteinWP_095902759.1
Context group ID
GCF_002303155::NZ_MPFV01000130.1::G00036Context members
BGV23_RS13410BGV23_RS13415
Partner locus tags
BGV23_RS13410BGV23_RS13415
Partner old locus tags
BGV23_13300BGV23_13305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095902759.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV23_RS13415Primary locus identifier stored in the genes table.
Old locus tagBGV23_13305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFV01000130.1Sequence record reported by the local genomic context database.
Genomic interval9 325-10 449 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 685-10 449 ntGCF_002303155::NZ_MPFV01000130.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303155::NZ_MPFV01000130.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFV01000130.1All displayed genes belong to this local TCS context.
Neighborhood span8 685-10 449 nt1 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 685 nt10 449 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV23_RS13410GCF_002303155#BGV23_RS13410
RRNarL
8 685-9 332 nt · Reverse (-)
BGV23_RS13415GCF_002303155#BGV23_RS13415
HKClassicCurrent focus
9 325-10 449 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303155#BGV23_RS13415The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2658438
Simplified PFAM architecture for HKOC_2658438
PFAM domain coverage: 150 / 374 aa (40.1%)
1 aa374 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[175-239] | HATPase_c[281-365]
- Domain count: 2
- Matched identifier: HKOC_2658438
- Positioned domains: HisKA_3 175-239 ; HATPase_c 281-365
Cluster members and taxonomy
Representative gene: GCF_002303155#BGV23_RS13415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303155
AssemblyASM230315v1 · Contighaploid
Genome composition4 277 346 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key