1 HisKA#1
224-288 aa · 65 aa · 14.6% of protein
Raw token
HisKA:224:0.000000000000274:288:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV23_RS01095
Histidine kinase, Classic
Clostridioides difficile · GCF_002303155
ClassHKTypeClassicLength445 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303155#BGV23_RS01095Stable P2CS identifier used across views.
GenomeGCF_002303155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 445 aa (39.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa445 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
335-443 aa · 109 aa · 24.5% of protein
Raw token
HATPase_c:335:3.17e-21:443:109:109- Raw architecture: HisKA:224:0.000000000000274:288:65:64#HATPase_c:335:3.17e-21:443:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303155::NZ_MPFV01000004.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5539-6876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV23_01090RefSeq proteinWP_095902545.1
Context group ID
GCF_002303155::NZ_MPFV01000004.1::G00003Context members
BGV23_RS01095
Partner locus tags
BGV23_RS01095
Partner old locus tags
BGV23_01090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095902545.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV23_RS01095Primary locus identifier stored in the genes table.
Old locus tagBGV23_01090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFV01000004.1Sequence record reported by the local genomic context database.
Genomic interval5 539-6 876 nt1 338 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 539-6 876 ntGCF_002303155::NZ_MPFV01000004.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303155::NZ_MPFV01000004.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFV01000004.1All displayed genes belong to this local TCS context.
Neighborhood span5 539-6 876 nt1 338 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 539 nt6 876 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV23_RS01095GCF_002303155#BGV23_RS01095
HKClassicCurrent focus
5 539-6 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303155#BGV23_RS01095The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2023735
Simplified PFAM architecture for HKOC_2023735
PFAM domain coverage: 174 / 445 aa (39.1%)
1 aa445 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[224-288] | HATPase_c[335-443]
- Domain count: 2
- Matched identifier: HKOC_2023735
- Positioned domains: HisKA 224-288 ; HATPase_c 335-443
Cluster members and taxonomy
Representative gene: GCF_002303155#BGV23_RS01095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303155
AssemblyASM230315v1 · Contighaploid
Genome composition4 277 346 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key