1 HAMP#1
155-221 aa · 67 aa · 15.3% of protein
Raw token
HAMP:155:0.000000000643:221:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV21_RS17990
Histidine kinase, Classic
Clostridioides difficile · GCF_002303105
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303105#BGV21_RS17990Stable P2CS identifier used across views.
GenomeGCF_002303105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage218 / 439 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-290 aa · 59 aa · 13.4% of protein
Raw token
HisKA:232:0.000000000226:290:59:643 HATPase_c#3
347-438 aa · 92 aa · 21.0% of protein
Raw token
HATPase_c:347:0.0000000155:438:108:109- Raw architecture: HAMP:155:0.000000000643:221:70:69#HisKA:232:0.000000000226:290:59:64#HATPase_c:347:0.0000000155:438:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303105::NZ_MPFT01000095.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4796-6812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV21_17730RefSeq proteinWP_095926208.1
Context group ID
GCF_002303105::NZ_MPFT01000095.1::G00054Context members
BGV21_RS17985BGV21_RS17990
Partner locus tags
BGV21_RS17985BGV21_RS17990
Partner old locus tags
BGV21_17725BGV21_17730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095926208.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV21_RS17990Primary locus identifier stored in the genes table.
Old locus tagBGV21_17730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFT01000095.1Sequence record reported by the local genomic context database.
Genomic interval5 493-6 812 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 796-6 812 ntGCF_002303105::NZ_MPFT01000095.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303105::NZ_MPFT01000095.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFT01000095.1All displayed genes belong to this local TCS context.
Neighborhood span4 796-6 812 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 796 nt6 812 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV21_RS17985GCF_002303105#BGV21_RS17985
RROmpR
4 796-5 500 nt · Forward (+)
BGV21_RS17990GCF_002303105#BGV21_RS17990
HKClassicCurrent focus
5 493-6 812 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303105#BGV21_RS17990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c_53 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2084081
Simplified PFAM architecture for HKOC_2084081
PFAM domain coverage: 169 / 439 aa (38.5%)
1 aa439 aa
HAMPHisKAHATPase_c_5
- Simplified architecture: HAMP + HisKA + HATPase_c_5
- Raw architecture: HAMP[176-220] | HisKA[234-290] | HATPase_c_5[369-435]
- Domain count: 3
- Matched identifier: HKOC_2084081
- Positioned domains: HAMP 176-220 ; HisKA 234-290 ; HATPase_c_5 369-435
Cluster members and taxonomy
Representative gene: GCF_002303105#BGV21_RS17990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303105
AssemblyASM230310v1 · Contighaploid
Genome composition4 397 851 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key