1 Response_reg#1
11-95 aa · 85 aa · 39.4% of protein
Raw token
Response_reg:11:1.31e-17:95:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV21_RS12355
Response regulator LytTR family
Clostridioides difficile · GCF_002303105
ClassRRTypeLytTRLength216 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303105#BGV21_RS12355Stable P2CS identifier used across views.
GenomeGCF_002303105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 216 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 LytTR#2
116-207 aa · 92 aa · 42.6% of protein
Raw token
LytTR:116:4.2e-22:207:97:98- Raw architecture: Response_reg:11:1.31e-17:95:88:111#LytTR:116:4.2e-22:207:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303105::NZ_MPFT01000037.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38965-39615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV21_12200RefSeq proteinWP_095926167.1
Context group ID
GCF_002303105::NZ_MPFT01000037.1::G00032Context members
BGV21_RS12355
Partner locus tags
BGV21_RS12355
Partner old locus tags
BGV21_12200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095926167.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV21_RS12355Primary locus identifier stored in the genes table.
Old locus tagBGV21_12200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFT01000037.1Sequence record reported by the local genomic context database.
Genomic interval38 965-39 615 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 965-39 615 ntGCF_002303105::NZ_MPFT01000037.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303105::NZ_MPFT01000037.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFT01000037.1All displayed genes belong to this local TCS context.
Neighborhood span38 965-39 615 nt651 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 965 nt39 615 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV21_RS12355GCF_002303105#BGV21_RS12355
RRLytTRCurrent focus
38 965-39 615 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303105#BGV21_RS12355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1883827
Simplified PFAM architecture for RROC_1883827
PFAM domain coverage: 177 / 216 aa (81.9%)
1 aa216 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-95] | LytTR[117-207]
- Domain count: 2
- Matched identifier: RROC_1883827
- Positioned domains: Response_reg 10-95 ; Response_reg 10-95 ; LytTR 117-207 ; LytTR 117-207
Cluster members and taxonomy
Representative gene: GCF_002303105#BGV21_RS12355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303105
AssemblyASM230310v1 · Contighaploid
Genome composition4 397 851 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key