1 Response_reg#1
5-115 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:5:2.85e-30:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV21_RS08800
Response regulator OmpR family
Clostridioides difficile · GCF_002303105
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303105#BGV21_RS08800Stable P2CS identifier used across views.
GenomeGCF_002303105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:152:3.64e-34:228:77:77- Raw architecture: Response_reg:5:2.85e-30:115:111:111#Trans_reg_C:152:3.64e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303105::NZ_MPFT01000021.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20445-22579Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV21_08710RefSeq proteinWP_009889742.1
Context group ID
GCF_002303105::NZ_MPFT01000021.1::G00028Context members
BGV21_RS08795BGV21_RS08800
Partner locus tags
BGV21_RS08795BGV21_RS08800
Partner old locus tags
BGV21_08705BGV21_08710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889742.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QYP3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QYP3_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV21_RS08800Primary locus identifier stored in the genes table.
Old locus tagBGV21_08710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFT01000021.1Sequence record reported by the local genomic context database.
Genomic interval21 881-22 579 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 445-22 579 ntGCF_002303105::NZ_MPFT01000021.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303105::NZ_MPFT01000021.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFT01000021.1All displayed genes belong to this local TCS context.
Neighborhood span20 445-22 579 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 445 nt22 579 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV21_RS08795GCF_002303105#BGV21_RS08795
HKClassic
20 445-21 878 nt · Reverse (-)
BGV21_RS08800GCF_002303105#BGV21_RS08800
RROmpRCurrent focus
21 881-22 579 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119292
Simplified PFAM architecture for RROC_1119292
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1119292
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303105
AssemblyASM230310v1 · Contighaploid
Genome composition4 397 851 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key