1 HisKA#1
3-65 aa · 63 aa · 28.5% of protein
Raw token
HisKA:3:0.000000000000018:65:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV19_RS21420
Histidine kinase, Classic
Clostridioides difficile · GCF_002303085
ClassHKTypeClassicLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303085#BGV19_RS21420Stable P2CS identifier used across views.
GenomeGCF_002303085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 221 aa (74.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
114-215 aa · 102 aa · 46.2% of protein
Raw token
HATPase_c:114:4.31e-24:215:103:109- Raw architecture: HisKA:3:0.000000000000018:65:63:64#HATPase_c:114:4.31e-24:215:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303085::NZ_MPFR01000067.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6866-8853Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002303085::NZ_MPFR01000067.1::G00039Context members
BGV19_RS21420BGV19_RS15100
Partner locus tags
BGV19_RS21420BGV19_RS15100
Partner old locus tags
BGV19_14935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231614650.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV19_RS21420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_MPFR01000067.1Sequence record reported by the local genomic context database.
Genomic interval6 866-7 531 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 866-8 853 ntGCF_002303085::NZ_MPFR01000067.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303085::NZ_MPFR01000067.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFR01000067.1All displayed genes belong to this local TCS context.
Neighborhood span6 866-8 853 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 866 nt8 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV19_RS21420GCF_002303085#BGV19_RS21420
HKClassicCurrent focus
6 866-7 531 nt · Forward (+)
BGV19_RS15100GCF_002303085#BGV19_RS15100
RRNtrC
7 531-8 853 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450885#QOM_RS08495Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0847989
Simplified PFAM architecture for HKOC_0847989
PFAM domain coverage: 385 / 669 aa (57.5%)
1 aa669 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[65-282] | HisKA[453-514] | HATPase_c[560-664]
- Domain count: 3
- Matched identifier: HKOC_0847989
- Positioned domains: SBP_bac_3 65-282 ; HisKA 453-514 ; HATPase_c 560-664
Cluster members and taxonomy
Representative gene: GCF_000450885#QOM_RS08495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303085
AssemblyASM230308v1 · Contighaploid
Genome composition4 329 291 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 47 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key