1 HisKA#1
207-271 aa · 65 aa · 15.2% of protein
Raw token
HisKA:207:0.00000000000139:271:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV17_RS18100
Histidine kinase, Classic
Clostridioides difficile · GCF_002303025
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303025#BGV17_RS18100Stable P2CS identifier used across views.
GenomeGCF_002303025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 428 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-426 aa · 109 aa · 25.5% of protein
Raw token
HATPase_c:318:8.67e-22:426:109:109- Raw architecture: HisKA:207:0.00000000000139:271:65:64#HATPase_c:318:8.67e-22:426:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303025::NZ_MPFP01000342.1::G00054
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1289Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV17_17850RefSeq proteinWP_141248395.1
Context group ID
GCF_002303025::NZ_MPFP01000342.1::G00054Context members
BGV17_RS18100
Partner locus tags
BGV17_RS18100
Partner old locus tags
BGV17_17850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141248395.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV17_RS18100Primary locus identifier stored in the genes table.
Old locus tagBGV17_17850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFP01000342.1Sequence record reported by the local genomic context database.
Genomic interval1-1 289 nt1 289 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 289 ntGCF_002303025::NZ_MPFP01000342.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303025::NZ_MPFP01000342.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFP01000342.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 289 nt1 289 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 289 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV17_RS18100GCF_002303025#BGV17_RS18100
HKClassicCurrent focus
1-1 289 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303025#BGV17_RS18100The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2190807
Simplified PFAM architecture for HKOC_2190807
PFAM domain coverage: 174 / 428 aa (40.7%)
1 aa428 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[207-271] | HATPase_c[318-426]
- Domain count: 2
- Matched identifier: HKOC_2190807
- Positioned domains: HisKA 207-271 ; HATPase_c 318-426
Cluster members and taxonomy
Representative gene: GCF_002303025#BGV17_RS18100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303025
AssemblyASM230302v1 · Contighaploid
Genome composition4 060 983 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key