1 HisKA#1
68-135 aa · 68 aa · 23.4% of protein
Raw token
HisKA:68:0.0000000000000621:135:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV17_RS14530
Histidine kinase, Classic
Clostridioides difficile · GCF_002303025
ClassHKTypeClassicLength290 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303025#BGV17_RS14530Stable P2CS identifier used across views.
GenomeGCF_002303025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length290 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 290 aa (60.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa290 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
182-288 aa · 107 aa · 36.9% of protein
Raw token
HATPase_c:182:3.4e-27:288:108:109- Raw architecture: HisKA:68:0.0000000000000621:135:68:64#HATPase_c:182:3.4e-27:288:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303025::NZ_MPFP01000181.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7008-7881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV17_14340RefSeq proteinWP_141248383.1
Context group ID
GCF_002303025::NZ_MPFP01000181.1::G00046Context members
BGV17_RS14530
Partner locus tags
BGV17_RS14530
Partner old locus tags
BGV17_14340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141248383.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV17_RS14530Primary locus identifier stored in the genes table.
Old locus tagBGV17_14340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFP01000181.1Sequence record reported by the local genomic context database.
Genomic interval7 008-7 881 nt874 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 008-7 881 ntGCF_002303025::NZ_MPFP01000181.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303025::NZ_MPFP01000181.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFP01000181.1All displayed genes belong to this local TCS context.
Neighborhood span7 008-7 881 nt874 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 008 nt7 881 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV17_RS14530GCF_002303025#BGV17_RS14530
HKClassicCurrent focus
7 008-7 881 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303025#BGV17_RS14530The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2896294
Simplified PFAM architecture for HKOC_2896294
PFAM domain coverage: 172 / 290 aa (59.3%)
1 aa290 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[68-132] | HATPase_c[182-288]
- Domain count: 2
- Matched identifier: HKOC_2896294
- Positioned domains: HisKA 68-132 ; HATPase_c 182-288
Cluster members and taxonomy
Representative gene: GCF_002303025#BGV17_RS14530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303025
AssemblyASM230302v1 · Contighaploid
Genome composition4 060 983 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key