1 HAMP#1
18-85 aa · 68 aa · 22.6% of protein
Raw token
HAMP:18:0.00000435:85:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS17720
Histidine kinase, Classic
Clostridioides difficile · GCF_002302985
ClassHKTypeClassicLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302985#BGV14_RS17720Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 301 aa (75.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation3 items
2 HisKA#2
95-153 aa · 59 aa · 19.6% of protein
Raw token
HisKA:95:8.31e-18:153:59:643 HATPase_c#3
201-301 aa · 101 aa · 33.6% of protein
Raw token
HATPase_c:201:5.54e-28:301:106:109- Raw architecture: HAMP:18:0.00000435:85:68:69#HisKA:95:8.31e-18:153:59:64#HATPase_c:201:5.54e-28:301:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302985::NZ_MPGG01000821.1::G00060
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span355-1261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_17430RefSeq proteinWP_095892438.1
Context group ID
GCF_002302985::NZ_MPGG01000821.1::G00060Context members
BGV14_RS17720
Partner locus tags
BGV14_RS17720
Partner old locus tags
BGV14_17430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095892438.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS17720Primary locus identifier stored in the genes table.
Old locus tagBGV14_17430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000821.1Sequence record reported by the local genomic context database.
Genomic interval355-1 261 nt907 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span355-1 261 ntGCF_002302985::NZ_MPGG01000821.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000821.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000821.1All displayed genes belong to this local TCS context.
Neighborhood span355-1 261 nt907 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
355 nt1 261 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV14_RS17720GCF_002302985#BGV14_RS17720
HKClassicCurrent focus
355-1 261 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS05670Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504248
Simplified PFAM architecture for HKOC_1504248
PFAM domain coverage: 161 / 495 aa (32.5%)
1 aa495 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[287-347] | HATPase_c[395-494]
- Domain count: 2
- Matched identifier: HKOC_1504248
- Positioned domains: HisKA 287-347 ; HATPase_c 395-494
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS05670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key