1 Response_reg#1
3-85 aa · 83 aa · 42.3% of protein
Raw token
Response_reg:3:6.91e-23:85:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS14550
Response regulator OmpR family
Clostridioides difficile · GCF_002302985
ClassRRTypeOmpRLength196 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302985#BGV14_RS14550Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length196 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 196 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa196 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
116-192 aa · 77 aa · 39.3% of protein
Raw token
Trans_reg_C:116:2.14e-28:192:77:77- Raw architecture: Response_reg:3:6.91e-23:85:84:111#Trans_reg_C:116:2.14e-28:192:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302985::NZ_MPGG01000496.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1331-2833Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_14340RefSeq proteinWP_095892344.1
Context group ID
GCF_002302985::NZ_MPGG01000496.1::G00043Context members
BGV14_RS14545BGV14_RS14550
Partner locus tags
BGV14_RS14545BGV14_RS14550
Partner old locus tags
BGV14_14335BGV14_14340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095892344.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS14550Primary locus identifier stored in the genes table.
Old locus tagBGV14_14340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000496.1Sequence record reported by the local genomic context database.
Genomic interval2 241-2 833 nt593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 331-2 833 ntGCF_002302985::NZ_MPGG01000496.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000496.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000496.1All displayed genes belong to this local TCS context.
Neighborhood span1 331-2 833 nt1 503 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 331 nt2 833 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV14_RS14545GCF_002302985#BGV14_RS14545
HKClassic
1 331-2 239 nt · Reverse (-)
BGV14_RS14550GCF_002302985#BGV14_RS14550
RROmpRCurrent focus
2 241-2 833 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS14110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588061
Simplified PFAM architecture for RROC_1588061
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[143-218]
- Domain count: 2
- Matched identifier: RROC_1588061
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 143-218 ; Trans_reg_C 143-218
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS14110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key