1 HisKA_3#1
36-101 aa · 66 aa · 28.1% of protein
Raw token
HisKA_3:36:3.63e-20:101:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS13300
Histidine kinase, Classic
Clostridioides difficile · GCF_002302985
ClassHKTypeClassicLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302985#BGV14_RS13300Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 235 aa (64.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
142-226 aa · 85 aa · 36.2% of protein
Raw token
HATPase_c:142:0.000000000145:226:104:109- Raw architecture: HisKA_3:36:3.63e-20:101:67:68#HATPase_c:142:0.000000000145:226:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302985::NZ_MPGG01000411.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_13110RefSeq proteinWP_141248276.1
Context group ID
GCF_002302985::NZ_MPGG01000411.1::G00039Context members
BGV14_RS13300BGV14_RS13305
Partner locus tags
BGV14_RS13300BGV14_RS13305
Partner old locus tags
BGV14_13110BGV14_13115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141248276.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS13300Primary locus identifier stored in the genes table.
Old locus tagBGV14_13110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000411.1Sequence record reported by the local genomic context database.
Genomic interval1-710 nt710 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 350 ntGCF_002302985::NZ_MPGG01000411.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000411.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000411.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 350 nt1 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV14_RS13300GCF_002302985#BGV14_RS13300
HKClassicCurrent focus
1-710 nt · Forward (+)
BGV14_RS13305GCF_002302985#BGV14_RS13305
RRNarL
703-1 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS06750Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550181
Simplified PFAM architecture for HKOC_2550181
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550181
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key