1 HAMP#1
1-48 aa · 48 aa · 16.4% of protein
Raw token
HAMP:1:0.0000000541:48:48:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS03195
Histidine kinase, Classic
Clostridioides difficile · GCF_002302985
ClassHKTypeClassicLength293 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302985#BGV14_RS03195Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length293 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 293 aa (76.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa293 aa
Domain-by-domain annotation3 items
2 HisKA#2
73-138 aa · 66 aa · 22.5% of protein
Raw token
HisKA:73:0.00000000000000519:138:66:643 HATPase_c#3
184-293 aa · 110 aa · 37.5% of protein
Raw token
HATPase_c:184:2.71e-18:293:111:109- Raw architecture: HAMP:1:0.0000000541:48:48:69#HisKA:73:0.00000000000000519:138:66:64#HATPase_c:184:2.71e-18:293:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302985::NZ_MPGG01000039.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span10573-11454Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_03140RefSeq proteinWP_330401462.1
Context group ID
GCF_002302985::NZ_MPGG01000039.1::G00010Context members
BGV14_RS03195
Partner locus tags
BGV14_RS03195
Partner old locus tags
BGV14_03140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330401462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS03195Primary locus identifier stored in the genes table.
Old locus tagBGV14_03140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000039.1Sequence record reported by the local genomic context database.
Genomic interval10 573-11 454 nt882 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 573-11 454 ntGCF_002302985::NZ_MPGG01000039.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000039.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000039.1All displayed genes belong to this local TCS context.
Neighborhood span10 573-11 454 nt882 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 573 nt11 454 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV14_RS03195GCF_002302985#BGV14_RS03195
HKClassicCurrent focus
10 573-11 454 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302985#BGV14_RS03195The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893443
Simplified PFAM architecture for HKOC_2893443
PFAM domain coverage: 220 / 293 aa (75.1%)
1 aa293 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[3-48] | HisKA[73-138] | HATPase_c[185-292]
- Domain count: 3
- Matched identifier: HKOC_2893443
- Positioned domains: HAMP 3-48 ; HisKA 73-138 ; HATPase_c 185-292
Cluster members and taxonomy
Representative gene: GCF_002302985#BGV14_RS03195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key