1 HAMP#1
70-137 aa · 68 aa · 18.2% of protein
Raw token
HAMP:70:0.00000000138:137:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS00920
Histidine kinase, Classic
Clostridioides difficile · GCF_002302985
ClassHKTypeClassicLength373 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302985#BGV14_RS00920Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length373 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 373 aa (63.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa373 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-221 aa · 64 aa · 17.2% of protein
Raw token
HisKA:158:0.00000000813:221:64:643 HATPase_c#3
271-373 aa · 103 aa · 27.6% of protein
Raw token
HATPase_c:271:9.51e-17:373:106:109- Raw architecture: HAMP:70:0.00000000138:137:70:69#HisKA:158:0.00000000813:221:64:64#HATPase_c:271:9.51e-17:373:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302985::NZ_MPGG01000006.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11107-12893Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_00885RefSeq proteinWP_095892159.1
Context group ID
GCF_002302985::NZ_MPGG01000006.1::G00006Context members
BGV14_RS00920BGV14_RS00925
Partner locus tags
BGV14_RS00920BGV14_RS00925
Partner old locus tags
BGV14_00885BGV14_00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095892159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS00920Primary locus identifier stored in the genes table.
Old locus tagBGV14_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000006.1Sequence record reported by the local genomic context database.
Genomic interval11 107-12 228 nt1 122 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 107-12 893 ntGCF_002302985::NZ_MPGG01000006.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000006.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span11 107-12 893 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 107 nt12 893 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV14_RS00920GCF_002302985#BGV14_RS00920
HKClassicCurrent focus
11 107-12 228 nt · Reverse (-)
BGV14_RS00925GCF_002302985#BGV14_RS00925
RROmpR
12 225-12 893 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302985#BGV14_RS00920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2665251
Simplified PFAM architecture for HKOC_2665251
PFAM domain coverage: 166 / 373 aa (44.5%)
1 aa373 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-221] | HATPase_c[271-372]
- Domain count: 2
- Matched identifier: HKOC_2665251
- Positioned domains: HisKA 158-221 ; HATPase_c 271-372
Cluster members and taxonomy
Representative gene: GCF_002302985#BGV14_RS00920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key