1 HisKA#1
65-129 aa · 65 aa · 23.9% of protein
Raw token
HisKA:65:0.00000102:129:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV15_RS12125
Histidine kinase, Classic
Clostridioides difficile · GCF_002302975
ClassHKTypeClassicLength272 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302975#BGV15_RS12125Stable P2CS identifier used across views.
GenomeGCF_002302975Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 272 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
175-252 aa · 78 aa · 28.7% of protein
Raw token
HATPase_c:175:0.00000375:252:90:109- Raw architecture: HisKA:65:0.00000102:129:65:64#HATPase_c:175:0.00000375:252:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302975::NZ_MPGN01000070.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV15_12020RefSeq proteinWP_198962553.1
Context group ID
GCF_002302975::NZ_MPGN01000070.1::G00034Context members
BGV15_RS12125
Partner locus tags
BGV15_RS12125
Partner old locus tags
BGV15_12020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_198962553.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV15_RS12125Primary locus identifier stored in the genes table.
Old locus tagBGV15_12020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGN01000070.1Sequence record reported by the local genomic context database.
Genomic interval1-819 nt819 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-819 ntGCF_002302975::NZ_MPGN01000070.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302975::NZ_MPGN01000070.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGN01000070.1All displayed genes belong to this local TCS context.
Neighborhood span1-819 nt819 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt819 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV15_RS12125GCF_002302975#BGV15_RS12125
HKClassicCurrent focus
1-819 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302975#BGV15_RS12125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2906328
Simplified PFAM architecture for HKOC_2906328
PFAM domain coverage: 143 / 272 aa (52.6%)
1 aa272 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[66-129] | HATPase_c[175-253]
- Domain count: 2
- Matched identifier: HKOC_2906328
- Positioned domains: HisKA 66-129 ; HATPase_c 175-253
Cluster members and taxonomy
Representative gene: GCF_002302975#BGV15_RS12125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302975
AssemblyASM230297v1 · Contighaploid
Genome composition4 169 960 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key