1 HisKA#1
62-126 aa · 65 aa · 22.9% of protein
Raw token
HisKA:62:0.000000000528:126:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV15_RS10585
Histidine kinase, Classic
Clostridioides difficile · GCF_002302975
ClassHKTypeClassicLength284 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302975#BGV15_RS10585Stable P2CS identifier used across views.
GenomeGCF_002302975Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length284 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 284 aa (58.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa284 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
182-281 aa · 100 aa · 35.2% of protein
Raw token
HATPase_c:182:1.61e-25:281:100:109- Raw architecture: HisKA:62:0.000000000528:126:65:64#HATPase_c:182:1.61e-25:281:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302975::NZ_MPGN01000055.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span25184-26038Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV15_10495RefSeq proteinWP_236876013.1
Context group ID
GCF_002302975::NZ_MPGN01000055.1::G00029Context members
BGV15_RS10585
Partner locus tags
BGV15_RS10585
Partner old locus tags
BGV15_10495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236876013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV15_RS10585Primary locus identifier stored in the genes table.
Old locus tagBGV15_10495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGN01000055.1Sequence record reported by the local genomic context database.
Genomic interval25 184-26 038 nt855 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 184-26 038 ntGCF_002302975::NZ_MPGN01000055.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302975::NZ_MPGN01000055.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGN01000055.1All displayed genes belong to this local TCS context.
Neighborhood span25 184-26 038 nt855 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 184 nt26 038 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV15_RS10585GCF_002302975#BGV15_RS10585
HKClassicCurrent focus
25 184-26 038 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003863255#EGL89_RS00720Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2074353
Simplified PFAM architecture for HKOC_2074353
PFAM domain coverage: 170 / 440 aa (38.6%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[217-282] | HATPase_c[334-437]
- Domain count: 2
- Matched identifier: HKOC_2074353
- Positioned domains: HisKA 217-282 ; HATPase_c 334-437
Cluster members and taxonomy
Representative gene: GCF_003863255#EGL89_RS00720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302975
AssemblyASM230297v1 · Contighaploid
Genome composition4 169 960 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key