1 H-kinase_dim#1
72-133 aa · 62 aa · 13.5% of protein
Raw token
H-kinase_dim:72:0.00000000000000443:133:67:67P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV12_RS16300
Histidine kinase, CheA
Clostridioides difficile · GCF_002302945
ClassHKTypeCheALength460 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302945#BGV12_RS16300Stable P2CS identifier used across views.
GenomeGCF_002302945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
H-kinase_dimHATPase_cCheW
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage337 / 460 aa (73.3%)Merged over positioned domains only.
Domain description1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
180-319 aa · 140 aa · 30.4% of protein
Raw token
HATPase_c:180:8.6e-17:319:140:1093 CheW#3
324-458 aa · 135 aa · 29.3% of protein
Raw token
CheW:324:1.93e-22:458:136:138- Raw architecture: H-kinase_dim:72:0.00000000000000443:133:67:67#HATPase_c:180:8.6e-17:319:140:109#CheW:324:1.93e-22:458:136:138
- Domain description: 1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302945::NZ_MPFO01000134.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9000-10384Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV12_16165RefSeq proteinWP_095890511.1
Context group ID
GCF_002302945::NZ_MPFO01000134.1::G00048Context members
BGV12_RS16300
Partner locus tags
BGV12_RS16300
Partner old locus tags
BGV12_16165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095890511.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV12_RS16300Primary locus identifier stored in the genes table.
Old locus tagBGV12_16165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFO01000134.1Sequence record reported by the local genomic context database.
Genomic interval9 000-10 384 nt1 385 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 000-10 384 ntGCF_002302945::NZ_MPFO01000134.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302945::NZ_MPFO01000134.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFO01000134.1All displayed genes belong to this local TCS context.
Neighborhood span9 000-10 384 nt1 385 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 000 nt10 384 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV12_RS16300GCF_002302945#BGV12_RS16300
HKCheACurrent focus
9 000-10 384 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302945#BGV12_RS16300The current gene is the representative for this cluster.
PFAM architectureH-kinase_dim + HATPase_c + CheW3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1835892
Simplified PFAM architecture for HKOC_1835892
PFAM domain coverage: 334 / 460 aa (72.6%)
1 aa460 aa
H-kinase_dimHATPase_cCheW
- Simplified architecture: H-kinase_dim + HATPase_c + CheW
- Raw architecture: H-kinase_dim[72-133] | HATPase_c[182-319] | CheW[325-458]
- Domain count: 3
- Matched identifier: HKOC_1835892
- Positioned domains: H-kinase_dim 72-133 ; HATPase_c 182-319 ; CheW 325-458
Cluster members and taxonomy
Representative gene: GCF_002302945#BGV12_RS16300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302945
AssemblyASM230294v1 · Contighaploid
Genome composition4 179 041 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key