1 HisKA#1
172-238 aa · 67 aa · 16.9% of protein
Raw token
HisKA:172:0.000000000000675:238:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV10_RS07395
Histidine kinase, Classic
Clostridioides difficile · GCF_002302905
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302905#BGV10_RS07395Stable P2CS identifier used across views.
GenomeGCF_002302905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 397 aa (44.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa397 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
284-392 aa · 109 aa · 27.5% of protein
Raw token
HATPase_c:284:1.82e-26:392:110:109- Raw architecture: HisKA:172:0.000000000000675:238:67:64#HATPase_c:284:1.82e-26:392:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302905::NZ_MPFM01000035.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26775-28638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV10_07310RefSeq proteinWP_009903831.1
Context group ID
GCF_002302905::NZ_MPFM01000035.1::G00017Context members
BGV10_RS07395BGV10_RS07400
Partner locus tags
BGV10_RS07395BGV10_RS07400
Partner old locus tags
BGV10_07310BGV10_07315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009903831.1Primary protein accession used for annex mappings.
UniProt accessionA0A031WHV8Primary UniProt accession resolved in the annex database.
UniProt IDA0A031WHV8_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV10_RS07395Primary locus identifier stored in the genes table.
Old locus tagBGV10_07310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFM01000035.1Sequence record reported by the local genomic context database.
Genomic interval26 775-27 956 nt1 182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 775-28 638 ntGCF_002302905::NZ_MPFM01000035.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302905::NZ_MPFM01000035.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFM01000035.1All displayed genes belong to this local TCS context.
Neighborhood span26 775-28 638 nt1 864 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 775 nt28 638 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV10_RS07395GCF_002302905#BGV10_RS07395
HKClassicCurrent focus
26 775-27 956 nt · Reverse (-)
BGV10_RS07400GCF_002302905#BGV10_RS07400
RROmpR
27 946-28 638 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302905#BGV10_RS07395The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2471040
Simplified PFAM architecture for HKOC_2471040
PFAM domain coverage: 175 / 397 aa (44.1%)
1 aa397 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-237] | HATPase_c[285-393]
- Domain count: 2
- Matched identifier: HKOC_2471040
- Positioned domains: HisKA 172-237 ; HATPase_c 285-393
Cluster members and taxonomy
Representative gene: GCF_002302905#BGV10_RS07395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302905
AssemblyASM230290v1 · Contighaploid
Genome composition4 201 497 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 45 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key