1 HisKA_3#1
134-199 aa · 66 aa · 19.8% of protein
Raw token
HisKA_3:134:2.17e-20:199:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV09_RS17030
Histidine kinase, Classic
Clostridioides difficile · GCF_002302885
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302885#BGV09_RS17030Stable P2CS identifier used across views.
GenomeGCF_002302885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 333 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
240-324 aa · 85 aa · 25.5% of protein
Raw token
HATPase_c:240:0.000000000137:324:104:109- Raw architecture: HisKA_3:134:2.17e-20:199:67:68#HATPase_c:240:0.000000000137:324:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302885::NZ_MPFL01000099.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV09_16820RefSeq proteinWP_095903380.1
Context group ID
GCF_002302885::NZ_MPFL01000099.1::G00051Context members
BGV09_RS17030BGV09_RS17035
Partner locus tags
BGV09_RS17030BGV09_RS17035
Partner old locus tags
BGV09_16820BGV09_16825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095903380.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV09_RS17030Primary locus identifier stored in the genes table.
Old locus tagBGV09_16820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFL01000099.1Sequence record reported by the local genomic context database.
Genomic interval1-1 002 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 642 ntGCF_002302885::NZ_MPFL01000099.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302885::NZ_MPFL01000099.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFL01000099.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 642 nt1 642 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 642 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV09_RS17030GCF_002302885#BGV09_RS17030
HKClassicCurrent focus
1-1 002 nt · Forward (+)
BGV09_RS17035GCF_002302885#BGV09_RS17035
RRNarL
995-1 642 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451305#QEE_RS06915Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550385
Simplified PFAM architecture for HKOC_2550385
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550385
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000451305#QEE_RS06915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302885
AssemblyASM230288v1 · Contighaploid
Genome composition4 063 663 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key