1 Response_reg#1
15-127 aa · 113 aa · 45.9% of protein
Raw token
Response_reg:15:0.000000000000299:127:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV08_RS13650
Response regulator LytTR family
Clostridioides difficile · GCF_002302865
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302865#BGV08_RS13650Stable P2CS identifier used across views.
GenomeGCF_002302865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 246 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
147-227 aa · 81 aa · 32.9% of protein
Raw token
LytTR:147:7.9e-18:227:87:98- Raw architecture: Response_reg:15:0.000000000000299:127:117:111#LytTR:147:7.9e-18:227:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302865::NZ_MPFK01000062.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24482-25223Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV08_13480RefSeq proteinWP_236879609.1
Context group ID
GCF_002302865::NZ_MPFK01000062.1::G00042Context members
BGV08_RS13650
Partner locus tags
BGV08_RS13650
Partner old locus tags
BGV08_13480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236879609.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV08_RS13650Primary locus identifier stored in the genes table.
Old locus tagBGV08_13480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFK01000062.1Sequence record reported by the local genomic context database.
Genomic interval24 482-25 223 nt742 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 482-25 223 ntGCF_002302865::NZ_MPFK01000062.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302865::NZ_MPFK01000062.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFK01000062.1All displayed genes belong to this local TCS context.
Neighborhood span24 482-25 223 nt742 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 482 nt25 223 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV08_RS13650GCF_002302865#BGV08_RS13650
RRLytTRCurrent focus
24 482-25 223 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302865#BGV08_RS13650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0773236
Simplified PFAM architecture for RROC_0773236
PFAM domain coverage: 197 / 246 aa (80.1%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-126] | LytTR[149-233]
- Domain count: 2
- Matched identifier: RROC_0773236
- Positioned domains: Response_reg 15-126 ; Response_reg 15-126 ; LytTR 149-233 ; LytTR 149-233
Cluster members and taxonomy
Representative gene: GCF_002302865#BGV08_RS13650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302865
AssemblyASM230286v1 · Contighaploid
Genome composition4 349 124 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 51 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key