1 Response_reg#1
3-115 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:3:0.00000134:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV07_RS19050
Response regulator LytTR family
Clostridioides difficile · GCF_002302845
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302845#BGV07_RS19050Stable P2CS identifier used across views.
GenomeGCF_002302845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 238 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
153-238 aa · 86 aa · 36.1% of protein
Raw token
LytTR:153:0.00000000000000711:238:91:98- Raw architecture: Response_reg:3:0.00000134:115:113:111#LytTR:153:0.00000000000000711:238:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302845::NZ_MPGC01000356.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-716Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV07_18765RefSeq proteinWP_095920883.1
Context group ID
GCF_002302845::NZ_MPGC01000356.1::G00056Context members
BGV07_RS19050
Partner locus tags
BGV07_RS19050
Partner old locus tags
BGV07_18765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095920883.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV07_RS19050Primary locus identifier stored in the genes table.
Old locus tagBGV07_18765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGC01000356.1Sequence record reported by the local genomic context database.
Genomic interval1-716 nt716 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-716 ntGCF_002302845::NZ_MPGC01000356.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302845::NZ_MPGC01000356.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGC01000356.1All displayed genes belong to this local TCS context.
Neighborhood span1-716 nt716 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt716 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV07_RS19050GCF_002302845#BGV07_RS19050
RRLytTRCurrent focus
1-716 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213140Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0743179
Simplified PFAM architecture for RROC_0743179
PFAM domain coverage: 92 / 248 aa (37.1%)
1 aa248 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[155-246]
- Domain count: 1
- Matched identifier: RROC_0743179
- Positioned domains: LytTR 155-246 ; LytTR 155-246
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302845
AssemblyASM230284v1 · Contighaploid
Genome composition4 071 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key